Course Detail
Course Description
Course | Code | Semester | T+P (Hour) | Credit | ECTS |
---|
PROTEIN: STRUCTURE and FUNCTION | BME3149450 | Fall Semester | 3+0 | 3 | 6 |
Prerequisites Courses | |
Recommended Elective Courses | |
Language of Course | English |
Course Level | First Cycle (Bachelor's Degree) |
Course Type | Elective |
Course Coordinator | Assoc.Prof. Özge ŞENSOY |
Name of Lecturer(s) | Assoc.Prof. Özge ŞENSOY |
Assistant(s) | |
Aim | The aim of the course is to understand the 3D structure of proteins and make connection between the structure and the function of proteins. In addition, novel proteins can be designed with tailored functions. |
Course Content | This course contains; Basic Structural Principles,Folding and Flexibility,DNA Structure,Structure, Function and Engineering,The mechanism of DNA recognition in prokaryotes and eukaryotes ,Enzyme Catalysis,Membrane Proteins,Signal Transduction,Fibrous Proteins,The mechanism of recognition of foreign molecules by immune system,The Structure of Spherical Viruses,The principles of prediction, Engineering and Design of Protein Structures,Determination of Protein Structures,Special Topics. |
Dersin Öğrenme Kazanımları | Teaching Methods | Assessment Methods |
Capable of building the relation between protein structure and function | 10, 12, 14, 16, 19, 9 | A, E, F |
Proteins can be designed with novel functions. | 10, 12, 14, 16, 19, 5, 9 | A, E, F |
The impact of environment on the enzyme kinetics can be interpreted. | 10, 16, 19, 20 | A, E, F |
Capable of interpretation of the results obtained from molecular dynamics simulations in terms of protein structure-function relationship. | 16, 19, 20 | A, E, F |
Teaching Methods: | 10: Discussion Method, 12: Problem Solving Method, 14: Self Study Method, 16: Question - Answer Technique, 19: Brainstorming Technique, 20: Reverse Brainstorming Technique, 5: Cooperative Learning, 9: Lecture Method |
Assessment Methods: | A: Traditional Written Exam, E: Homework, F: Project Task |
Course Outline
Order | Subjects | Preliminary Work |
---|
1 | Basic Structural Principles | |
2 | Folding and Flexibility | |
3 | DNA Structure | |
4 | Structure, Function and Engineering | |
5 | The mechanism of DNA recognition in prokaryotes and eukaryotes | |
6 | Enzyme Catalysis | |
7 | Membrane Proteins | |
8 | Signal Transduction | |
9 | Fibrous Proteins | |
10 | The mechanism of recognition of foreign molecules by immune system | |
11 | The Structure of Spherical Viruses | |
12 | The principles of prediction, Engineering and Design of Protein Structures | |
13 | Determination of Protein Structures | |
14 | Special Topics | |
Resources |
Introduction to Protein Structure, 2 nd Edition, Carl Brendon and John Tooze |
Course Contribution to Program Qualifications
Course Contribution to Program Qualifications |
No | Program Qualification | Contribution Level |
1 | 2 | 3 | 4 | 5 |
1 | An ability to apply knowledge of mathematics, science, and engineering | | | | X | |
2 | An ability to identify, formulate, and solve engineering problems | | | X | | |
3 | An ability to design a system, component, or process to meet desired needs within realistic constraints such as economic, environmental, social, political, ethical, health and safety, manufacturability, and sustainability | | | X | | |
4 | An ability to use the techniques, skills, and modern engineering tools necessary for engineering practice | | | X | | |
5 | An ability to use the techniques, skills, and modern engineering tools necessary for engineering practice | | | | X | |
6 | An ability to function on multidisciplinary teams | | | | X | |
7 | An ability to communicate effectively | | | | X | |
8 | A recognition of the need for, and an ability to engage in life-long learning | | | | X | |
9 | An understanding of professional and ethical responsibility | | X | | | |
10 | A knowledge of contemporary issues | | X | | | |
11 | The broad education necessary to understand the impact of engineering solutions in a global, economic, environmental, and societal context | | X | | | |
12 | Capability to apply and decide on engineering principals while understanding and rehabilitating the human body | | | | X | |
Assessment Methods
Contribution Level | Absolute Evaluation |
Rate of Midterm Exam to Success | | 30 |
Rate of Final Exam to Success | | 70 |
Total | | 100 |
ECTS / Workload Table |
Activities | Number of | Duration(Hour) | Total Workload(Hour) |
Course Hours | 14 | 3 | 42 |
Guided Problem Solving | 0 | 0 | 0 |
Resolution of Homework Problems and Submission as a Report | 1 | 40 | 40 |
Term Project | 0 | 0 | 0 |
Presentation of Project / Seminar | 1 | 20 | 20 |
Quiz | 0 | 0 | 0 |
Midterm Exam | 1 | 30 | 30 |
General Exam | 1 | 40 | 40 |
Performance Task, Maintenance Plan | 0 | 0 | 0 |
Total Workload(Hour) | 172 |
Dersin AKTS Kredisi = Toplam İş Yükü (Saat)/30*=(172/30) | 6 |
ECTS of the course: 30 hours of work is counted as 1 ECTS credit. |
Detail Informations of the Course
Course Description
Course | Code | Semester | T+P (Hour) | Credit | ECTS |
---|
PROTEIN: STRUCTURE and FUNCTION | BME3149450 | Fall Semester | 3+0 | 3 | 6 |
Prerequisites Courses | |
Recommended Elective Courses | |
Language of Course | English |
Course Level | First Cycle (Bachelor's Degree) |
Course Type | Elective |
Course Coordinator | Assoc.Prof. Özge ŞENSOY |
Name of Lecturer(s) | Assoc.Prof. Özge ŞENSOY |
Assistant(s) | |
Aim | The aim of the course is to understand the 3D structure of proteins and make connection between the structure and the function of proteins. In addition, novel proteins can be designed with tailored functions. |
Course Content | This course contains; Basic Structural Principles,Folding and Flexibility,DNA Structure,Structure, Function and Engineering,The mechanism of DNA recognition in prokaryotes and eukaryotes ,Enzyme Catalysis,Membrane Proteins,Signal Transduction,Fibrous Proteins,The mechanism of recognition of foreign molecules by immune system,The Structure of Spherical Viruses,The principles of prediction, Engineering and Design of Protein Structures,Determination of Protein Structures,Special Topics. |
Dersin Öğrenme Kazanımları | Teaching Methods | Assessment Methods |
Capable of building the relation between protein structure and function | 10, 12, 14, 16, 19, 9 | A, E, F |
Proteins can be designed with novel functions. | 10, 12, 14, 16, 19, 5, 9 | A, E, F |
The impact of environment on the enzyme kinetics can be interpreted. | 10, 16, 19, 20 | A, E, F |
Capable of interpretation of the results obtained from molecular dynamics simulations in terms of protein structure-function relationship. | 16, 19, 20 | A, E, F |
Teaching Methods: | 10: Discussion Method, 12: Problem Solving Method, 14: Self Study Method, 16: Question - Answer Technique, 19: Brainstorming Technique, 20: Reverse Brainstorming Technique, 5: Cooperative Learning, 9: Lecture Method |
Assessment Methods: | A: Traditional Written Exam, E: Homework, F: Project Task |
Course Outline
Order | Subjects | Preliminary Work |
---|
1 | Basic Structural Principles | |
2 | Folding and Flexibility | |
3 | DNA Structure | |
4 | Structure, Function and Engineering | |
5 | The mechanism of DNA recognition in prokaryotes and eukaryotes | |
6 | Enzyme Catalysis | |
7 | Membrane Proteins | |
8 | Signal Transduction | |
9 | Fibrous Proteins | |
10 | The mechanism of recognition of foreign molecules by immune system | |
11 | The Structure of Spherical Viruses | |
12 | The principles of prediction, Engineering and Design of Protein Structures | |
13 | Determination of Protein Structures | |
14 | Special Topics | |
Resources |
Introduction to Protein Structure, 2 nd Edition, Carl Brendon and John Tooze |
Course Contribution to Program Qualifications
Course Contribution to Program Qualifications |
No | Program Qualification | Contribution Level |
1 | 2 | 3 | 4 | 5 |
1 | An ability to apply knowledge of mathematics, science, and engineering | | | | X | |
2 | An ability to identify, formulate, and solve engineering problems | | | X | | |
3 | An ability to design a system, component, or process to meet desired needs within realistic constraints such as economic, environmental, social, political, ethical, health and safety, manufacturability, and sustainability | | | X | | |
4 | An ability to use the techniques, skills, and modern engineering tools necessary for engineering practice | | | X | | |
5 | An ability to use the techniques, skills, and modern engineering tools necessary for engineering practice | | | | X | |
6 | An ability to function on multidisciplinary teams | | | | X | |
7 | An ability to communicate effectively | | | | X | |
8 | A recognition of the need for, and an ability to engage in life-long learning | | | | X | |
9 | An understanding of professional and ethical responsibility | | X | | | |
10 | A knowledge of contemporary issues | | X | | | |
11 | The broad education necessary to understand the impact of engineering solutions in a global, economic, environmental, and societal context | | X | | | |
12 | Capability to apply and decide on engineering principals while understanding and rehabilitating the human body | | | | X | |
Assessment Methods
Contribution Level | Absolute Evaluation |
Rate of Midterm Exam to Success | | 30 |
Rate of Final Exam to Success | | 70 |
Total | | 100 |
Numerical Data
Ekleme Tarihi: 09/10/2023 - 10:40Son Güncelleme Tarihi: 09/10/2023 - 10:41
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